There is a new tournament option available to always pair players within the same team during swiss rounds, treating each team as a separate pod. If you select this option, swiss rounds will be paired separately for each team. Players not belonging to a team will not be paired at all with this option selected, so make sure you assign all players to a team. Elimination rounds are still paired normally with this option, so you can have a cut with the top players from each pod. (If you want to have a graduated cut of additional swiss rounds with players from all pods, you must disable the option in the tournament edit form after playing the preliminary pod rounds.)
The default tournament scoreboard will show the standings for each pod with the new option selected. You can choose to view the overall standings instead by selecting the appropriate option from the Select scoreboard menu.